| 1 |  Bubacarr TambedouPenalty goals: 0 |  FCI Levadia | 14 |
| 2 |  Rauno SappinenPenalty goals: 0 |  Flora Tallinn | 9 |
| 2 |  Wendell GabrielPenalty goals: 0 | FCI Levadia | 9 |
| 4 |  Henri VäljaPenalty goals: 0 |  Parnu JK Vaprus | 8 |
| 5 |  Mattias MännilaanPenalty goals: 0 |  Nomme JK Kalju | 7 |
| 6 |  Tristan KoskorPenalty goals: 0 |  Tammeka | 6 |
| 6 |  Zakaria BeglarishviliPenalty goals: 0 |  Nomme United | 6 |
| 6 |  Pavel MarinPenalty goals: 0 | Tammeka | 6 |
| 6 |  Matthias LimbergPenalty goals: 0 | Parnu JK Vaprus | 6 |
| 6 |  Karel EermePenalty goals: 0 |  Harju Jalgpallikool | 6 |
| 6 |  Andero KiviPenalty goals: 0 |  FC Kuressaare | 6 |
| 12 |  Nikita IvanovPenalty goals: 0 | Nomme JK Kalju | 5 |
| 12 |  Sergei ZenjovPenalty goals: 0 | Flora Tallinn | 5 |
| 12 |  Sander AlamaaPenalty goals: 0 | Flora Tallinn | 5 |
| 12 |  Ahmad GeroPenalty goals: 0 |  Narva Trans | 5 |
| 12 |  Daniel CabralPenalty goals: 0 |  Paide Linnameeskond | 5 |
| 12 |  Henri AnierPenalty goals: 0 | Paide Linnameeskond | 5 |
| 12 |  Maksimilian SkvortsovPenalty goals: 0 | FCI Levadia | 5 |
| 12 |  Mark RoosnuppPenalty goals: 0 | FCI Levadia | 5 |
| 12 |  Mihkel AinsaluPenalty goals: 0 | FCI Levadia | 5 |
| 12 | Pedro ManoelPenalty goals: 0 | Tammeka | 5 |
| 22 |  Taaniel UstaPenalty goals: 0 | Flora Tallinn | 4 |
| 22 |  Tiago BaptistaPenalty goals: 0 | Nomme JK Kalju | 4 |
| 22 |  Andre FrolovPenalty goals: 0 | Nomme United | 4 |
| 22 | Benjamine ChisalaPenalty goals: 0 | Nomme United | 4 |
| 22 | Dacosta OwusuPenalty goals: 0 | Nomme United | 4 |
| 22 | Egert ÕunapuuPenalty goals: 0 | Nomme United | 4 |
| 22 |  Enock OtooPenalty goals: 0 | FCI Levadia | 4 |
| 22 |  Mihhail OrlovPenalty goals: 0 | Nomme JK Kalju | 4 |
| 22 |  Pa SohnaPenalty goals: 0 | Paide Linnameeskond | 4 |
| 31 |  Danyil RudenkoPenalty goals: 0 | Harju Jalgpallikool | 3 |
| 31 |  Abdourahman BadamosiPenalty goals: 0 | Paide Linnameeskond | 3 |
| 31 | Kristjan KriisPenalty goals: 0 | Harju Jalgpallikool | 3 |
| 31 | Ricky ChandaPenalty goals: 0 | Nomme United | 3 |
| 31 |  Sten ViidasPenalty goals: 0 | Parnu JK Vaprus | 3 |
| 36 |  Joosep PõderPenalty goals: 0 | Parnu JK Vaprus | 2 |
| 36 | Johann VahermägiPenalty goals: 0 | FC Kuressaare | 2 |
| 36 |  Frank LiivakPenalty goals: 0 | FCI Levadia | 2 |
| 36 | Enrique EsonoPenalty goals: 0 | Nomme JK Kalju | 2 |
| 36 |  Daniel LutsPenalty goals: 0 | Paide Linnameeskond | 2 |
| 36 |  Andres JärvePenalty goals: 0 | Harju Jalgpallikool | 2 |
| 36 |  Abraham NwankwoPenalty goals: 0 | FCI Levadia | 2 |
| 36 |  Jevgeni DemidovPenalty goals: 0 | FC Kuressaare | 2 |
| 36 | Abdul BinatePenalty goals: 0 | Harju Jalgpallikool | 2 |
| 36 |  Henri JärvelaidPenalty goals: 0 | Nomme United | 2 |
| 36 |  Ilja AntonovPenalty goals: 0 | Flora Tallinn | 2 |
| 36 |  Mark LepikPenalty goals: 0 | Parnu JK Vaprus | 2 |
| 36 |  Kristofer PihtPenalty goals: 0 | Paide Linnameeskond | 2 |
| 36 | Kevin MätasPenalty goals: 0 | Nomme United | 2 |
| 36 |  Kevin AloePenalty goals: 0 | Parnu JK Vaprus | 2 |
